Publications

see also my Google Scholar profile

Preprints

Aranda-Díaz A, Willis L, Nguyen TH, Ho P-Y, Vila J, Thomsen T, Chavez T,  Yan R, Yu FB, Neff N, Sanchez A, Estrela S, and Huang KC (2023) Assembly of gut-derived bacterial communities follows “early-bird” resource utilization dynamics. bioRxiv doi.org/10.1101/2023.01.13.523996

Chang C-Y, Bajic D, Vila JCC, Estrela S, Sanchez A (2022) Emergent coexistence in multispecies microbial communities. bioRxiv doi.org/10.1101/2022.05.20.492860
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Estrela S, Diaz-Colunga J, Vila JCC, Sanchez-Gorostiaga A, and Sanchez A (2022) Diversity begets diversity under microbial niche construction. bioRxiv doi.org/10.1101/2022.02.13.480281

In press / published

Venturelli OS, Wang HH, Estrela S, Huang KC, Ledesma-Amaro R, Fedorec AJH, Stecher B, Lawson CE, Zarrinpar A, Guo CJ, Soyer OS (2023) What is the key challenge in engineering microbiomes? Cell Systems 14(2):85-90. doi: 10.1016/j.cels.2023.01.002
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Estrela S, Vila JCC, Lu N, Bajic D, Rebolleda-Gomez M, Chang CY, Goldford JE, Sanchez-Gorostiaga A, and Sanchez A (2021) Functional attractors in microbial community assembly. Cell Systems 13(1):29-42.e7 doi: 10.1016/j.cels.2021.09.011 [pdf]

Dutton CL, Subalusky AL, Sanchez A, Estrela S, Lu N, Hamilton SK, Njoroge L, Rosi EJ and Post DM (2021)
The meta-gut: Hippo inputs lead to community coalescence of animal and environmental microbiomes. Scientific Reports 11, 23117
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Estrela S*, Sanchez-Gorostiaga A*, Vila J* & Sanchez A (2021) Nutrient dominance governs the assembly of microbial communities in mixed nutrient environments. eLife 10:e65948

Estrela S*, Sanchez A* & Rebolleda-Gomez M* (2021) Multi-replicated enrichment communities as a model system in microbial ecology. Frontiers in Microbiology doi: 10.3389/fmicb.2021.657467
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Chang C-Y*, Vila J*, Bender J, Li R, Mankowski MC, Bassette M, Borden J, Golfier S, Sanchez PG, Waymack R, Zhu X, Diaz-Colunga J, Estrela S, Rebolleda-Gomez M & Sanchez A (2021) Engineering complex communities by directed evolution. Nature Ecology & Evolution doi.org/10.1038/s41559-021-01457-5

Rodrigues AMM*, Estrela S* and Brown SP (2021) Community lifespan, niche expansion and the evolution of interspecific cooperation. Journal of Evolutionary Biology 34: 352– 363 [pdf]
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Sanchez A, Vila J, Chang C-Y, Diaz-Colunga J, Estrela S and Rebolleda-Gomez M (2021) Directed evolution of microbial communities. Annual Review of Biophysics (in press) doi:10.1146/annurev-biophys-101220-072829

Estrela S*, Libby E*, Van Cleve J*, Débarre F, Deforet M, Harcombe WR, Peña J, Brown SP and Hochberg ME (2019) Environmentally mediated social dilemmas. Trends in Ecology & Evolution 34 (1), 6-18 [pdf]
Goldford J*, Lu N*, Bajic D, Estrela S, Tikhonov M, Sanchez-Gorostiaga A, Segre D, Mehta P, and Sanchez A (2018) Emergent simplicity in microbial community assembly. Science 361:469-74 [pdf]

Estrela S and Brown SP (2018) Community interactions and spatial structure shape selection on antibiotic resistant lineages. PLoS Computational Biology 14(6): e1006179.
Estrela S, Kerr B, and Morris JJ (2016) Transitions in individuality through symbiosis. Current Opinion in Microbiology 31: 191–198 [pdf]

Estrela S, Morris JJ, and Kerr B (2015) Private benefits and metabolic conflicts shape the emergence of microbial interdependencies. Environmental Microbiology 18: 1415-1427 [pdf]

Estrela S, Whiteley M, and Brown SP (2015) The demographic determinants of human microbiome health. Trends in Microbiology  23(3): 134-141 [Open Access]

Estrela S and Brown SP (2013) Metabolic and demographic feedbacks shape the emergent spatial structure and function of microbial communities. PLoS Computational Biology 9(12): e1003398.

Estrela S, Trisos CH, and Brown SP (2012) From metabolism to ecology: cross-feeding interactions shape the balance between polymicrobial conflict and mutualism. The American Naturalist 180: 566-576 [Open Access]

Eswarappa SM, Estrela S, and Brown SP (2012) Within-host dynamics of multi-species infections: facilitation, competition and virulence. PLoS ONE 7(6): e38730.

​Garrido F, Estrela S, Alves C, Sanchez-Perez GF, Sillero A, and Pajares MA (2011) Refolding and characterization of methionine adenosyltransferase from Euglena gracilis.Protein Expr. Purif. 79(1): 128-136.

Estrela S and Gudelj I (2010) Evolution of cooperative cross-feeding could be less challenging than originally thought. PLoS ONE 5(11): e14121